When to Use PowerTransformer vs StandardScaler
I always find the hard to remember the difference between the StandardScaler and PowerTransformer in the scikit-learn preprocessing toolbox. They solve very different problems but could probably be named better.
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StandardScaler is like resizing every photo in a gallery so they all share the same dimensions — zero mean and unit variance
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PowerTransformer is more like adjusting the brightness and contrast to make under ‑ and over‑exposed photos look natural, smoothing out skew and stabilizing variance.
At its core:
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StandardScaler
- Centers each feature by subtracting its mean and dividing by its standard deviation
- Guarantees zero mean and unit variance
- Works on any numeric data
- Ideal for scale‑sensitive algorithms (e.g., SVM, k‑means, PCA)
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PowerTransformer
- Applies a learned power transform (Yeo‑Johnson or Box‑Cox) to make data more Gaussian‑like
- Stabilizes variance and reduces skew, improving normality
- Yeo‑Johnson handles zero and negatives; Box‑Cox requires positives
- Best when your data is skewed or you have outliers that warp the distribution
Here's a quick code snippet showing how you might chain them in a pipeline:
from sklearn.preprocessing import PowerTransformer, StandardScaler
from sklearn.pipeline import Pipeline
pipeline = Pipeline([
("power", PowerTransformer(method="yeo-johnson")), # reshape distribution
("scale", StandardScaler()), # enforce zero mean & unit variance
])
X_transformed = pipeline.fit_transform(X)
Key insights:
- Use PowerTransformer to correct skew and stabilize variance before any further scaling.
- Use StandardScaler when features only need uniform scale.
- For extreme outliers, consider a RobustScaler, Winsorization, or an outlier‑detection step before PowerTransformer.